PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000372.1_g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 134aa    MW: 14885.2 Da    PI: 8.7288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000372.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.1e-142061246
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46
                             +y GVr ++ +g+++AeIrd + ng  +r++lg+f +aeeAa a+
  Itr_sc000372.1_g00015.1 20 HYIGVRKRP-WGKYAAEIRDTTRNG--ARVWLGTFSSAEEAALAY 61
                             799******.**********54465..****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.2E-202062IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-152065IPR016177DNA-binding domain
SMARTSM003801.1E-142084IPR001471AP2/ERF domain
PROSITE profilePS5103216.1992061IPR001471AP2/ERF domain
PfamPF008471.9E-92061IPR001471AP2/ERF domain
PRINTSPR003671.9E-92132IPR001471AP2/ERF domain
PRINTSPR003671.9E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MKQEPETFKP FCSDDDKEKH YIGVRKRPWG KYAAEIRDTT RNGARVWLGT FSSAEEAALA  60
YXXXXXXXXX XCGGGGFGLR SSGAVDAWAL ILPQFSGGES PRLNSRTQAV LRRRRAVVSG  120
GGVEGEAQEE MWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-191761246ATERF1
3gcc_A8e-191761246ATERF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-16ethylene responsive element binding factor 2